Spatiotemporal regulation of cell cycle states within the complex tumor microenvironment
bioRxiv, 2025
Publications
Single-cell multiomics reveals the oscillatory dynamics of mRNA metabolism and chromatin accessibility during the cell cycle
Cell Reports, 2025
Nariya, M.K., Santiago-Algarra, D., Tassy, O., Cerciat, M., Ye, T., Riba, A., Molina, N.
Proteomic profiling across breast cancer cell lines and models
Scientific Data, 2023
Kalocsay, M., Berberich, M.J., Everley, R.A., Nariya, M.K., Chung, M., Gaudio, B., Victor, C., Bradshaw, G.A., Hafner, M., Sorger P.K., Mills, C.E., Subramanian, K.
Paired evaluation of machine-learning models characterizes effects of confounders and outliers
Patterns, 2023
Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer
Cell, 2023
Ling, J.R., Wang, S., Coy, S., Chen, Y.A., Yapp, C., Tyler, M., Nariya, M.K., Heiser, C.N., Lau, K.S., Santagata, S., Sorger, P.K.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Nature Methods, 2021
Schapiro, D., Sokolov, A., Yapp, C., Muhlich, J. L., Hess, J., Lin, J.R., Chen, Y.A., Nariya, M.K., Baker, G.J., Ruokonen, J., Maliga Z., Jacobson C.A., Farhi S.L., Abbondanza, D., McKinley, E.T., Betts, C. Regev A., Coffey R.J., Lisa M., Coussens, L.M., Santagata, S., and Sorger P.K.
Robustness and the evolution of length control strategies in the type III secretion system and flagellar hook
Biophysical Journal, 2021
Crosstalk and ultrasensitivity in protein degradation pathways
PLoS Computational Biology, 2020
The Botanical Drug Substance Crofelemer as a Model System for Comparative Characterization of Complex Mixture Drugs
Journal of Pharmaceutical Sciences, 2017
Kleindl, P.A., Xiong, J., Hewarathna A., Mozziconacci, O., Nariya, M.K., Fisher, A.C., Deeds, E.J., Joshi, S.B., Middaugh, R.C., Schöneich, C., Volkin, D.B., Forrest, L.M.
Chemical Stability of the Botanical Drug Substance Crofelemer: A Model System for Comparative Characterization of Complex Mixture Drugs
Journal of Pharmaceutical Sciences, 2017
Hewarathna A., Mozziconacci, O., Nariya, M.K., Kleindl, P.A., Xiong, J., Fisher, A.C., Joshi, S.B., Middaugh, R.C., Volkin, D.B., Forrest, L.M., Deeds, E.J., Schöneich, C.
Comparative Characterization of Crofelemer Samples Using Data Mining and Machine Learning Approaches With Analytical Stability Data Sets
Journal of Pharmaceutical Chemistry, 2017
Nariya, M.K., Kim, J.H., Xiong, J., Kleindl, P.A., Hewarathna, A., Fisher, A.C., Joshi, S.B., Schöneich, C., Forrest, L.M., Middaugh, R.C., Volkin, D.B., Deeds, E.J.
Mathematical Model for Length Control by the Timing of Substrate Switching in the Type III Secretion System
PLoS Computational Biology, 2016