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publications

Mathematical Model for Length Control by the Timing of Substrate Switching in the Type III Secretion System

PLoS Computational Biology, 2016

Nariya, M.K., Israeli, J., Shi J.J., Deeds, E.J.

Comparative Characterization of Crofelemer Samples Using Data Mining and Machine Learning Approaches With Analytical Stability Data Sets

Journal of Pharmaceutical Chemistry, 2017

Nariya, M.K., Kim, J.H., Xiong, J., Kleindl, P.A., Hewarathna, A., Fisher, A.C., Joshi, S.B., Schöneich, C., Forrest, L.M., Middaugh, R.C., Volkin, D.B., Deeds, E.J.

Chemical Stability of the Botanical Drug Substance Crofelemer: A Model System for Comparative Characterization of Complex Mixture Drugs

Journal of Pharmaceutical Sciences, 2017

Hewarathna A., Mozziconacci, O., Nariya, M.K., Kleindl, P.A., Xiong, J., Fisher, A.C., Joshi, S.B., Middaugh, R.C., Volkin, D.B., Forrest, L.M., Deeds, E.J., Schöneich, C.

The Botanical Drug Substance Crofelemer as a Model System for Comparative Characterization of Complex Mixture Drugs

Journal of Pharmaceutical Sciences, 2017

Kleindl, P.A., Xiong, J., Hewarathna A., Mozziconacci, O., Nariya, M.K., Fisher, A.C., Deeds, E.J., Joshi, S.B., Middaugh, R.C., Schöneich, C., Volkin, D.B., Forrest, L.M.

Crosstalk and ultrasensitivity in protein degradation pathways

PLoS Computational Biology, 2020

Mallela, A., Nariya, M.K., Deeds, E.J.

Robustness and the evolution of length control strategies in the type III secretion system and flagellar hook

Biophysical Journal, 2021

Nariya, M.K., Mallela, A., Deeds, E.J.

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods, 2021

Schapiro, D., Sokolov, A., Yapp, C., Muhlich, J. L., Hess, J., Lin, J.R., Chen, Y.A., Nariya, M.K., Baker, G.J., Ruokonen, J., Maliga Z., Jacobson C.A., Farhi S.L., Abbondanza, D., McKinley, E.T., Betts, C. Regev A., Coffey R.J., Lisa M., Coussens, L.M., Santagata, S., and Sorger P.K.

Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer

Cell, 2023

Ling, J.R., Wang, S., Coy, S., Chen, Y.A., Yapp, C., Tyler, M., Nariya, M.K., Heiser, C.N., Lau, K.S., Santagata, S., Sorger, P.K.

Paired evaluation of machine-learning models characterizes effects of confounders and outliers

Patterns, 2023

Nariya, M.K., Mills, C.E., Sorger, P.K., Sokolov, A.

Proteomic profiling across breast cancer cell lines and models

Scientific Data, 2023

Kalocsay, M., Berberich, M.J., Everley, R.A., Nariya, M.K., Chung, M., Gaudio, B., Victor, C., Bradshaw, G.A., Hafner, M., Sorger P.K., Mills, C.E., Subramanian, K.

Single-cell multiomics reveals the oscillatory dynamics of mRNA metabolism and chromatin accessibility during the cell cycle

Cell Reports, 2025

Nariya, M.K., Santiago-Algarra, D., Tassy, O., Cerciat, M., Ye, T., Riba, A., Molina, N.

Spatiotemporal regulation of cell cycle states within the complex tumor microenvironment

bioRxiv, 2025

Zanardelli G., D., Tassy, O., Nariya, M.K.* , Molina, N.*

talks

Talk 1 on Relevant Topic in Your Field

Published: March 01, 2012

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Tutorial 1 on Relevant Topic in Your Field

Published: March 01, 2013

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Talk 2 on Relevant Topic in Your Field

Published: February 01, 2014